Can i apply in Polish embassy?
Yes, you can (-> Embassy of Poland - Consular Section).
will they issue me my daughter's birth certificate
Hmm, they should. Are you deprivated of parental rights?
i remeber only her pesel no. and i know here he born and where her name is regestired
You also need to know her birth date and parents' names. That's all. But in your case it is not a problem.
Officials in the Embassy should help you. Good luck!