Law / Leaving the country during Polish Karta Pobytu application [8]

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Leaving Poland before karta pobytu decision

I am from iraq
Married to a polish woman
I applied for temporary residence card 2 months ago in warsaw got a stamp on my passport that legalize my stay in poland until now got no response from the foreigners office ,

Now i have to go back to my country for most important things before the decision of my residence
Then apply for new schengen visa in my country and back to poland ( may take 3-4 months )
I would ask what will happened to my application ? They will close it ? They will punish me for that ?
They will not issue a residence card for me anymore ?
Please i am confused and dont know what to do